A Plasmid Editor Download Mac

| 13-05-2021
[RAND-1-100] Comments

  • Runs in Windows (XP, Vista, 7, 8, and 10) and Mac (OS X v10.5 and above)
  • Highlights restriction sites in the editing window
  • Accurately reflects Dam/Dcm blocking of enzyme sites
  • Highlights text using pre-defined and custom feature libraries
  • Shows translation, Tm, %GC, ORF of selected DNA in real-time
  • Reads DNA Strider, Fasta, Genbank and EMBL files
  • Saves files as DNA Strider-compatible or Genbank file format
  • Highlights and draws graphic maps using feature annotations from genbank and embl files
  • Directly BLASTs selected sequence at NCBI or wormbase

OS: Windows 7 or later. MacOS 10.10 or later. Fedora Linux 21 or later. Red Hat Linux 7.2 or later. Ubuntu Linux 14.04 or later. Memory: 1 GB RAM: Hard Disk: 250 MB available disk space.

A plasmid editor download

  • Text map shows DNA sequence, translation, and features as text-based graphics

  • Creates graphic restriction maps- linear or circular with features indicated
  • Connects graphic and text features with hyperlink double click
  • Saves graphics as encapsulated postscript or scalable vector graphics
  • Copy and save graphics as Windows metafiles (MS Windows only)

  • Virtual restriction digest
  • Draws pre-defined and user-defined DNA ladders
  • Connects bands to text by double-click

  • Reads ABI sequencing trace files
  • Sequences in ABI traces can be aligned directly to a reference sequence, with the alignment hyperlinked back to te trace.

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A Plasmid Editor Ape

  • Selects sites matching multiple criteria (union/intersection- cut frequency, site type) in all open windows
  • Selects sites that cut more often in one sequence than another (for snip-SNP detection or diagnostic digests)
  • Has user defined enzyme grouping to distiguish eg. enzymes currently in stock.
  • Allows users to define new enzymes by name and recognition site
  • Imports DNA Strider format files (simple enzyme, site lists) available from REBASE

A Plasmid Editor Tutorial

Other Features:

  • Most analysis windows are hyperlinked to their corresponding sequences, including:
    • Graphic Maps
    • Text maps
    • Virtual Digests
    • Alignments (including ABI sequences)
    • Silent Sites
    • Translation
    • Primer Find
  • Uses custom feature definition libraries, which allow:
    • Quick annotation of sequence
    • Quick searching and highlighting of all available primers that you (or others) have that hybridize to a sequence
    • Sequence to be annotated and visualized in multiple ways quickly and efficiently
    • Graphic maps that show primer binding sites and all interesting sequence features
  • Translates sequences with optional DNA alignment
  • Finds potential primers matching user criteria (length, Tm, %GC, self/other complementarity)
  • Aligns two DNA sequences (or any combination of sequence and ABI trace), with the alignment hyperlinked to the original sequence
  • Finds translationally silent restriction sites
  • Draws graphic ORF maps